SNP密度
简介
根据染色体长度(这里是根据每条染色体最大的SNP所在的坐标),将染色体按照binsize分成若干份,计算每份里边的SNP数,并绘制密度图。
数据说明
输入数据包括两列:第1列是染色体(绘图顺序按照从上到下出现的顺序绘制),第2列是SNP所在的基因组坐标位置。调用CMplot R包
论文例子
Genome-wide association study of cassava starch paste properties. Fig2
如何引用?
建议直接写网址。助力发表5500+篇
(google学术),4600+篇
(知网)
正式引用:Tang D, Chen M, Huang X, Zhang G, Zeng L, Zhang G, Wu S, Wang Y.
SRplot: A free online platform for data visualization and graphing. PLoS One. 2023 Nov 9;18(11):e0294236. doi: 10.1371/journal.pone.0294236. PMID: 37943830.
方法章节:Heatmap was plotted by https://www.bioinformatics.com.cn (last accessed on 10 Dec 2024), an online platform for data analysis and visualization.
致谢章节:We thank Mingjie Chen (Shanghai NewCore Biotechnology Co., Ltd.) for providing data analysis and visualization support.